Bacterial Pangenomics

PacBio-Based Protocol for Bacterial Genomes Assembly.- The Illumina Sequencing Protocol and the NovaSeq 6000 System.- Comparative Analysis of Core and Accessory Genes in Co-Expression Network.- Inferring Core Genome Phylogenies for Bacteria.- Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.- Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes.- Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study.- Accurate Annotation of Microbial Metagenomic Genes and Identification of Core Sets.- Metagenomic Assembly: Reconstructing Genomes from Metagenomes.- Genome Recovery, Functional Profiling, and Taxonomic Classification from Metagenomes.- Functional Metagenomics for Identification of Antibiotic Resistance Genes (ARGs).- Host Trait Prediction from High-Resolution Microbial Features.- Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.- Simple, Reliable, and Time-Efficient Manual Annotation of Bacterial Genomes with MAISEN.- A Compendium of Bioinformatic Tools for Bacterial Pangenomics to Be Used by Wet-Lab Scientists.- A Protocol for Teaching Basic Next Generations Sequencing (NGS) Analysis Skills to Undergraduate Students Using Bash and R.

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• Genética (não médica)
• Equipamentos científicos, experiências e técnicas
• Microbiologia (não médica)

Sequencing technologies;Cultured isolates;Genome-to-phenome inference;Prokaryotic genomics;Metagenomes;Metagenomic data