Role of Water in ATP Hydrolysis Energy Transduction by Protein Machinery

Part I: Basis of ATP Hydrolysis Reaction1. Free Energy Analyses for the ATP Hydrolysis in Aqueous Solution by Large-Scale QM/MM Simulations Combined with a Theory of Solutions



Hideaki Takahashi



2. Role of Metal Ion Binding and Protonation in ATP Hydrolysis Energetics



Shun-ichi Kidokoro



3. Spatial Distribution of Ionic Hydration Energy and Hyper-mobile Water



George Mogami, Makoto Suzuki and Nobuyuki Matubayasi



4. Theoretical studies of strong attractive interaction between macro-anions mediated by multivalent metal cations and related association behavior: Effective interaction between ATP binding proteins can be regulated by hydrolysis.



Ryo Akiyama



5. Statistical mechanical integral equation approach to reveal the solvation effect on hydrolysis free energy of ATP and its analogue



Norio Yoshida and Fumio Hirata



6. A Solvent Model of Nucleotide-protein interaction - Partition coefficients of phosphates in solvent-water mixtures-



Hideyuki Komatsu







Part II: Basis of Protein-Ligand and Protein-Protein Interactions



7. Energetics of myosin-ATP hydrolysis by calorimetry



Takao Kodama



8. Orchestrated electrostatic interactions among myosin, actin, ATP, and water



Mitsunori Takano



9. Protonation/deprotonation of proteins by neutron diffraction structure analysis



Ichiro Tanaka, Katsuhiro Kusaka, Nobuo Niimura



10. All-atom analysis of free energy of protein solvation through molecular simulation and solution theory



Nobuyuki Matubayasi



11. Uni-directional propagation of structural changes in actin filaments



Taro Q. P. Uyeda, Kien Xuan Ngo, Noriyuki Kodera, Kiyotaka Tokuraku



12. Functional mechanisms of ABC transporters as revealed by molecular simulations



Tadaomi Furuta, Minoru Sakurai



13. Statistical thermodynamics on the binding of biomolecules



Tomohiko Hayashi







Part III: Functioning Mechanisms of Protein Machinery



14. Ratchet model of motor proteins and its energetics



Yohei Nakayama and Eiro Muneyuki



15. Single Molecule Analysis of Actomyosin in the Presence of Osmolyte



Mitsuhiro Iwaki, Kohji Ito and Keisuke Fujita



16. Novel intermolecular surface force unveils the driving force of actomyosin system



Makoto Suzuki, George Mogami, Takahiro Watanabe, and Nobuyuki Matubayasi



17. Extremophilic enzymes related to energy conversion



Satoshi Wakai and Yoshihiro Sambongi



18. Functioning mechanism of ATP-driven proteins inferred on the basis of water-entropy effect



Masahiro Kinoshita



19. Controlling the motility of ATP-driven molecular motors using high hydrostatic pressure



Masayoshi Nishiyama



20. Modulation of the sliding movement of myosin-driven actin filaments associated with their distortion: The effect of ATP, ADP, and inorganic phosphate



Kuniyuki Hatori and Satoru Kikuchi

Este título pertence ao(s) assunto(s) indicados(s). Para ver outros títulos clique no assunto desejado.

• Química física
• Proteinas
• Biofísica

ATP hydrolysis;protein machinery;motor mechanism;hydration free energy;biological energetics;Protein-Ligand Interactions