Statistical Analysis of Proteomic Data

Statistical Analysis of Proteomic Data

Methods and Tools

Burger, Thomas

Springer-Verlag New York Inc.

10/2022

393

Dura

Inglês

9781071619667

15 a 20 dias

961

Descrição não disponível.
Unveiling the Links between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff Filters.- A Pipeline for Peptide Detection Using Multiple Decoys.- Enhanced Proteomic Data Analysis with MetaMorpheus.- Validation of MS/MS Identifications and Label-Free Quantification Using Proline.- Integrating Identification and Quantification Uncertainty for Differential Protein Abundance Analysis with Triqler.- Left-Censored Missing Value Imputation Approach for MS-Based Proteomics Data with Gsimp.- Towards a More Accurate Differential Analysis of Multiple Imputed Proteomics Data with mi4limma.- Uncertainty Aware Protein-Level Quantification and Differential Expression Analysis of Proteomics Data with seaMass.- Statistical Analysis of Quantitative Peptidomics and Peptide-Level Proteomics Data with Prostar.- msmsEDA and msmsTests: Label-Free Differential Expression by Spectral Counts.- Exploring Protein Interactome Data with IPinquiry: Statistical Analysis and Data Visualization by Spectral Counts.- Statistical Analysis of Post-Translational Modifications Quantified by Label-Free Proteomics Across Multiple Biological Conditions with R: Illustration from SARS-CoV-2 Infected Cells.- Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ.- Robust Prediction and Protein Selection with Adaptive PENSE.- Multivariate Analysis with the R Package mixOmics.- Integrating Multiple Quantitative Proteomic Analyses Using MetaMSD.- Application of WGCNA and PloGO2 in the Analysis of Complex Proteomic Data.
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Data processing computational routines;Machine learning;High dimensional statistics;Software suites;Chemostatistics;Differential analysis