High-Density Sequencing Applications in Microbial Molecular Genetics
portes grátis
High-Density Sequencing Applications in Microbial Molecular Genetics
Carpousis, Agamemnon J.
Elsevier Science Publishing Co Inc
12/2018
574
Dura
Inglês
9780128159934
15 a 20 dias
1040
Descrição não disponível.
1. Characterizing the Role of Exoribonucleases in the Control of Microbial Gene Expression: Differential RNA-Seq Vania Pobre and Cecilia M. Arraiano 2. Conformational Studies of Bacterial Chromosomes by High-Throughput Sequencing Methods Virginia S. Lioy and Frederic Boccard 3. Large-Scale Measurement of mRNA Degradation in Escherichia coli: To Delay or Not to Delay Sandrine Laguerre, Ignacio Gonzalez, Sebastien Nouaille, Annick Moisan, Nathalie Villa-Vialaneix, Christine Gaspin, Marie Bouvier, Agamemnon J. Carpousis, Muriel Cocaign-Bousquet and Laurence Girbal 4. FASTBAC-Seq: Functional AnalysiS of Toxin-Antitoxin Systems in BACteria by Deep Sequencing Sara Masachis, Nicolas J. Tourasse, Sandrine Chabas, Olivier Bouchez and Fabien Darfeuille 5. The Challenges of Genome-Wide Studies in a Unicellular Eukaryote With Two Nuclear Genomes Sandra Duharcourt and Linda Sperling 6. CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins Liis Andresen and Erik Holmqvist 7. High-Resolution Profiling of NMD Targets in Yeast Feng He, Alper Celik, Richard Baker and Allan Jacobson 8. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota Theo Foutel-Rodier, Agnes Thierry, Romain Koszul and Martial Marbouty 9. Genome-Wide Mapping of Yeast Retrotransposon Integration Target Sites Anastasia Barkova, Amna Asif-Laidin and Pascale Lesage 10. Genome-Wide Quantitation of Protein Synthesis Rates in Bacteria Grace E. Johnson and Gene-Wei Li 11. On the Prowl: An In Vivo Method to Identify RNA Partners of a sRNA Marie-Claude Carrier, Claire Morin and Eric Masse 12. Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER Irina O. Vvedenskaya, Seth R. Goldman and Bryce E. Nickels 13. Transcriptomic Approaches for Studying Quorum Sensing in Vibrio cholerae Roman Herzog and Kai Papenfort 14. In Vitro Study of the Major Bacillus subtilis Ribonucleases Y and J Liliana Mora, Saravuth Ngo, Soumaya Laalami and Harald Putzer 15. Mapping 5'-Ends and Their Phosphorylation State With EMOTE, TSS-EMOTE, and nEMOTE Peter Redder 16. MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus David Lalaouna, Emma Desgranges, Isabelle Caldelari and Stefano Marzi 17. Noncoding RNAs in Archaea: Genome-Wide Identification and Functional Classification Anne Buddeweg, Michael Daume, Lennart Randau and Ruth A. Schmitz 18. Methodology for Ribosome Profiling of Key Stages of the Caulobacter crescentus Cell Cycle James R. Aretakis, Nadra Al-Husini and Jared M. Schrader 19. Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria Jai J. Tree, Kenn Gerdes and David Tollervey 20. Profiling RNA Polymerase II Phosphorylation Genome-Wide in Fission Yeast Tea Kecman, Dong-Hyuk Heo and Lidia Vasiljeva 21. Toward Cell Type-Specific In Vivo Dual RNA-Seq Lutz Froenicke, Denise N. Bronner, Mariana X. Byndloss, Bridget McLaughlin, Andreas J. Baeumler and Alexander J. Westermann 22. Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli A.M. Mahedi Hasan, Benura Azeroglu and David R.F. Leach
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<P>high-density DNA sequencing; microbial molecular genetics; genome-wide analysis; integrative biology; genomics; transcriptomics; interaction networks; archaea; bacteria; yeast</P>
1. Characterizing the Role of Exoribonucleases in the Control of Microbial Gene Expression: Differential RNA-Seq Vania Pobre and Cecilia M. Arraiano 2. Conformational Studies of Bacterial Chromosomes by High-Throughput Sequencing Methods Virginia S. Lioy and Frederic Boccard 3. Large-Scale Measurement of mRNA Degradation in Escherichia coli: To Delay or Not to Delay Sandrine Laguerre, Ignacio Gonzalez, Sebastien Nouaille, Annick Moisan, Nathalie Villa-Vialaneix, Christine Gaspin, Marie Bouvier, Agamemnon J. Carpousis, Muriel Cocaign-Bousquet and Laurence Girbal 4. FASTBAC-Seq: Functional AnalysiS of Toxin-Antitoxin Systems in BACteria by Deep Sequencing Sara Masachis, Nicolas J. Tourasse, Sandrine Chabas, Olivier Bouchez and Fabien Darfeuille 5. The Challenges of Genome-Wide Studies in a Unicellular Eukaryote With Two Nuclear Genomes Sandra Duharcourt and Linda Sperling 6. CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins Liis Andresen and Erik Holmqvist 7. High-Resolution Profiling of NMD Targets in Yeast Feng He, Alper Celik, Richard Baker and Allan Jacobson 8. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota Theo Foutel-Rodier, Agnes Thierry, Romain Koszul and Martial Marbouty 9. Genome-Wide Mapping of Yeast Retrotransposon Integration Target Sites Anastasia Barkova, Amna Asif-Laidin and Pascale Lesage 10. Genome-Wide Quantitation of Protein Synthesis Rates in Bacteria Grace E. Johnson and Gene-Wei Li 11. On the Prowl: An In Vivo Method to Identify RNA Partners of a sRNA Marie-Claude Carrier, Claire Morin and Eric Masse 12. Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER Irina O. Vvedenskaya, Seth R. Goldman and Bryce E. Nickels 13. Transcriptomic Approaches for Studying Quorum Sensing in Vibrio cholerae Roman Herzog and Kai Papenfort 14. In Vitro Study of the Major Bacillus subtilis Ribonucleases Y and J Liliana Mora, Saravuth Ngo, Soumaya Laalami and Harald Putzer 15. Mapping 5'-Ends and Their Phosphorylation State With EMOTE, TSS-EMOTE, and nEMOTE Peter Redder 16. MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus David Lalaouna, Emma Desgranges, Isabelle Caldelari and Stefano Marzi 17. Noncoding RNAs in Archaea: Genome-Wide Identification and Functional Classification Anne Buddeweg, Michael Daume, Lennart Randau and Ruth A. Schmitz 18. Methodology for Ribosome Profiling of Key Stages of the Caulobacter crescentus Cell Cycle James R. Aretakis, Nadra Al-Husini and Jared M. Schrader 19. Transcriptome-Wide Analysis of Protein-RNA and RNA-RNA Interactions in Pathogenic Bacteria Jai J. Tree, Kenn Gerdes and David Tollervey 20. Profiling RNA Polymerase II Phosphorylation Genome-Wide in Fission Yeast Tea Kecman, Dong-Hyuk Heo and Lidia Vasiljeva 21. Toward Cell Type-Specific In Vivo Dual RNA-Seq Lutz Froenicke, Denise N. Bronner, Mariana X. Byndloss, Bridget McLaughlin, Andreas J. Baeumler and Alexander J. Westermann 22. Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli A.M. Mahedi Hasan, Benura Azeroglu and David R.F. Leach
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